PBoC - 2nd Edition

Figures

Chapter	File
Chapter 1 \| Why: Biology by the Numbers	JPEG	PPT
Chapter 2 \| What and Where: Construction Plans for Cells and Organisms	JPEG	PPT
Chapter 3 \| When: Space and Time Across Many Scales	JPEG	PPT
Chapter 4 \| Who: “Bless the Little Beasties”	JPEG	PPT
Chapter 5 \| Mechanical and Chemical Equilibrium in the Living Cell	JPEG	PPT
Chapter 6 \| Entropy Rules!	JPEG	PPT
Chapter 7 \| Two-State Systems: From Ion Channels to Cooperative Binding	JPEG	PPT
Chapter 8 \| Random Walks and the Structure of Macromolecules	JPEG	PPT
Chapter 9 \| Electrostatics for Salty Solutions	JPEG	PPT
Chapter 10 \| Beam Theory: Architecture for Cells and Skeletons	JPEG	PPT
Chapter 11 \| Biological Membranes: Lie in Two Dimensions	JPEG	PPT
Chapter 12 \| The Mathematics of Water	JPEG	PPT
Chapter 13 \| A Statistical View of Biological Dynamics	JPEG	PPT
Chapter 14 \| Life in Crowded and Disordered Environments	JPEG	PPT
Chapter 15 \| Rate Equations and Dynamics in the Cell	JPEG	PPT
Chapter 16 \| Dynamics of Molecular Motors	JPEG	PPT
Chapter 17 \| Biological Electricity and the Hodgkin-Huxley Model	JPEG	PPT
Chapter 18 \| Light and Life	JPEG	PPT
Chapter 19 \| Organization of Biological Networks	JPEG	PPT
Chapter 20 \| Biological Patterns: Order in Space and Time	JPEG	PPT
Chapter 21 \| Sequences, Specificity, and Evolution	JPEG	PPT
Chapter 22 \| Whither Physical Biology?	JPEG	PPT

Chapter	File
Chapter 0	Introduction to Matlab
Chapter 2\| What and Where: Construction Plans for Cells and Organisms	Sizing up E. coli
	Counting mRNA and Proteins by Dilution
Chapter 3 \| When: Stopwatches at Many Scales	Timing E. coli
	Growth Curves and the Logistic Equation
Chapter 5 \| Mechanical and Chemical Equilibrium in the Living Cell	Determining the Spring Constant for an Optical Trap
Chapter 7 \| Two-State Systems: From Ion Channels to Cooperative Binding	Determining Ion Channel Open Probability by Thresholding
Chapter 17 \| Biological Electricity and the Hodgkin-Huxley Model	Numerical Solution for the Cable Equation
Chapter 18 \| Light and Life	Electrons in a Well of Finite Depth
Chapter 19 \| Organization of Biological Networks	Extracting Level of Gene Expression from Microscopy Images
	The Gillespie Algorithm and Stochastic Models of Gene Regulation
Chapter 20 \| Biological Patters: Order in Space and Time	Scaling of Morphogen Gradients
Chapter 21 \| Sequences, Specificity, and Evolution	Searching the E.coli genome for Binding Sites

Section	File
Chapter 1 \| Why: Biology by the Numbers	Figure 1.11
Chapter 2 \| What and Where: Construction Plans for Cells and Organisms	Figure 2.02
	Figure 2.20
Chapter 3 \| When: Stopwatches at Many Scales	Figure 3.14A, Figure 3.14B
	Figure 3.15A, Figure 3.15B
	Figure 3.20
	Figure 3.33
Chapter 4 \| Who: “Bless the Little Beasties”	Figure 4.27
Chapter 5 \| Mechanical and Chemical Equilibrium in the Living Cell	Figure 5.5
	Figure 5.14
Chapter 6 \| Entropy Rules!	Figure 6.24
	Figure 6.28
Chapter 7 \| Two-State Systems: From Ion Channels to Cooperative Binding	Figure 7.2
	Figure 7.05
	Figure 7.23
	Figure 7.27
Chapter 8 \| Random Walks and the Structure of Macromolecules	Figure 8.11
	Figure 8.12
	Figure 8.14
	Figure 8.22
	Figure 8.35B
Chapter 9 \| Electrostatics for Salty Solutions	Figure 9.3
	Figure 9.20
Chapter 10 \| Beam Theory: Architecture for Cells and Skeletons	Figure 10.12
	Figure 10.17
	Figure 10.19B
	Figure 10.23
	Figure 10.25
	Figure 10.38
Chapter 11 \| Biological Membranes: Life in Two Dimensions	Figure 11.24
	Figure 11.35
	Figure 11.43
Chapter 12 \| The Mathematics of Water	Figure 12.20
Chapter 13 \| A Statistical View of Biological Dynamics	Figure 13.16
Chapter 14 \| Life in Crowded and Disordered Environments	Figure 14.3
	Figure 14.08
	Figure 14.11
	Figure 14.15
	Figure 14.18
	Figure 14.20
	Figure 14.24
	Figure 14.25
Chapter 15 \| Rate Equations and Dynamics in the Cell	Figure 15.13
	Figure 15.17
	Figure 15.23
	Figure 15.27
	Figure 15.32
	Figure 15.38
Chapter 16 \| Dynamics of Molecular Motors	Figure 16.27
	Figure 16.28
	Figure 16.34
	Figure 16.54
Chapter 18 \| Light and Life	Figure 18.20
	Figure 18.24
	Figure 18.30
	Figure 18.40
	Figure 18.58
Chapter 19 \| Organization of Biological Networks	Figure 19.2
	Figure 19.15
	Figure 19.22
	Figure 19.27
	Figure 19.28
	Figure 19.32
	Figure 19.33
	Figure 19.41
	Figure 19.62
	Figure 19.65
Chapter 20 \| Biological Patterns: Order in Space and Time	Figure 20.4
	Figure 20.6
	Figure 20.8
Chapter 21 \| Sequences, Specificity, and Evolution	Figure 21.14
	Figure 21.29

Figures

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Data Sets

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